How to Remove Toyota 4Runner Roof Rack? | Smooth Delete

Removing a 5th-gen 4Runner roof rack requires prying off four end caps, unbolting eight 12mm hex bolts alternately, and installing OEM delete brackets to seal the roof channels.

Want a cleaner roof line or planning to install an aftermarket rack? Knowing how to remove the Toyota 4Runner roof rack properly is the first step to a clean finish. The factory rack on a 5th-generation Toyota 4Runner (2010–2024) can be removed in about an hour. The key is using the right parts and technique to avoid spinning the internal nut retainers and prevent future water leaks. Here’s exactly what you need and how to do it.

Tools And Parts Needed

Before you start, gather the correct factory brackets and bolts—using them ensures a watertight seal. The table below covers everything.

Optional but recommended: J-B Weld Clear Silicone or PTFE tape for extra sealing confidence. An impact driver can speed up the initial bolt removal but is not required. Keep a protective rag handy to avoid scratching the paint.

Removing The Factory Roof Rack

This part is straightforward if you work in the right order. The most common mistake is removing one bolt completely before loosening its partner, which spins the nut retainer inside the roof channel. Going slow and alternating between bolts is the only way to avoid this.

1. Pry off the four plastic end caps using a trim tool. The tabs are at the front and back of each cap—work the tool in gently to avoid breaking the clips.
2. Loosen the bolts alternately. At each corner, you’ll find two 12mm hex bolts. Back one off a few turns, then do the same to the other. This prevents the captive nut from spinning. Remove both bolts once loose.
3. Lift the roof rack off the vehicle. It’s light enough for one person, but the rubber strips underneath may stick—wiggle it free carefully.
4. Clean the roof channels thoroughly. Any dirt or old sealant left behind will compromise the new seal. Make sure the channels are completely dry before installing the delete brackets.

If you’re considering a replacement, check out our roundup of the best 4Runner roof racks for top-rated options.

Sealing The Roof Channels

This is the step that separates a clean delete from a leaky one.

1. Fit the delete brackets (Part# 63185-42020) into the roof channels. Apply a dab of blue threadlocker to the middle of the new bolt threads (Part# 90119-08C47) and tighten them alternately with a 10mm socket—just like you loosened the old ones. Don’t over-tighten; the bracket should sit flush without crushing the roof metal.
2. Snap the plastic covers (Part# 75596-35030) over the brackets, making sure the arrow faces forward. Press firmly until they click into place.

The covers will sit flush with the roof line. No gaps, no rocking. If a cover feels loose, the bracket underneath isn’t seated correctly. For the full walkthrough, see Trail4Runner’s guide.

Once the brackets and covers are installed, stand back and admire the clean roofline. Your 4Runner is now ready for a new look or an aftermarket rack—and you’ve closed the chapter on wind noise and potential leaks.

FAQs

Do I need the OEM delete brackets, or can I just fill the holes with silicone?

Silicone alone can shrink, crack, or fail over time, and the factory bolt holes leave openings directly into the headliner.

Will this work on a TRD Pro 4Runner?

Yes, the procedure is identical for all 5th-generation 4Runner models, including the TRD Pro from 2015 onward. The factory rack is the same design across the lineup, and the same delete kit (Part# 63185-42020) fits without modification.

How long should the roof rack removal take?

Plan on about one to two hours for a first-time job. Removing the rack itself takes 30 minutes once the end caps are off. The extra time goes into cleaning the channels and carefully tightening the delete brackets. Rushing the seal step is the most common source of later regret.